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early-access version 2853

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This commit is contained in:
pineappleEA
2022-07-23 03:01:36 +02:00
parent 1f2b5081b5
commit 1f111bb69c
8955 changed files with 418777 additions and 999 deletions
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548
externals/vcpkg/ports/itk/openjpeg.patch vendored Executable file
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@@ -0,0 +1,548 @@
diff --git a/Modules/IO/JPEG2000/src/itkJPEG2000ImageIO.cxx b/Modules/IO/JPEG2000/src/itkJPEG2000ImageIO.cxx
index 1b1fe9526..0da4aa0c4 100644
--- a/Modules/IO/JPEG2000/src/itkJPEG2000ImageIO.cxx
+++ b/Modules/IO/JPEG2000/src/itkJPEG2000ImageIO.cxx
@@ -26,9 +26,9 @@
extern "C"
{
-#include "openjpeg.h"
-#include "j2k.h"
-#include "jp2.h"
+#include <openjpeg.h>
+//#include "j2k.h"
+//##include "jp2.h"
}
@@ -62,8 +62,7 @@ public:
OPJ_UINT32 m_TileStartX;
OPJ_UINT32 m_TileStartY;
- OPJ_UINT32 m_NumberOfTilesInX;
- OPJ_UINT32 m_NumberOfTilesInY;
+ OPJ_UINT32 m_NumberOfTiles;
opj_dparameters_t m_DecompressionParameters; /* decompression parameters */
};
@@ -86,8 +85,7 @@ JPEG2000ImageIO::JPEG2000ImageIO()
this->m_Internal->m_TileStartX = 0;
this->m_Internal->m_TileStartY = 0;
- this->m_Internal->m_NumberOfTilesInX = 0;
- this->m_Internal->m_NumberOfTilesInY = 0;
+ this->m_Internal->m_NumberOfTiles = 0;
const char * extensions[] = { ".j2k", ".jp2", ".jpt" };
@@ -139,22 +137,16 @@ JPEG2000ImageIO::ReadImageInformation()
{
itkDebugMacro(<< "ReadImageInformation()");
- FILE * l_file = fopen(this->m_FileName.c_str(), "rb");
-
- /* decompression parameters */
+ /* set decoding parameters to default values */
+ opj_set_default_decoder_parameters(&(this->m_Internal->m_DecompressionParameters));
- if (!l_file)
+ opj_stream_t * cio = opj_stream_create_default_file_stream(this->m_FileName.c_str(), true);
+ if (!cio)
{
itkExceptionMacro("JPEG2000ImageIO failed to open file for reading: " << this->GetFileName() << std::endl
<< "Reason: "
<< itksys::SystemTools::GetLastSystemError());
}
-
- /* set decoding parameters to default values */
- opj_set_default_decoder_parameters(&(this->m_Internal->m_DecompressionParameters));
-
- opj_stream_t * cio = opj_stream_create_default_file_stream(l_file, true);
-
this->m_Internal->m_Dinfo = nullptr; /* handle to a decompressor */
opj_image_t * l_image = nullptr;
@@ -187,14 +179,14 @@ JPEG2000ImageIO::ReadImageInformation()
/* JPEG-2000 codestream */
/* get a decoder handle */
- this->m_Internal->m_Dinfo = opj_create_decompress(CODEC_J2K);
+ this->m_Internal->m_Dinfo = opj_create_decompress(OPJ_CODEC_J2K);
if (!this->m_Internal->m_Dinfo)
{
opj_stream_destroy(cio);
- fclose(l_file);
+ // fclose(l_file);
itkExceptionMacro("JPEG2000ImageIO failed to read file: "
<< this->GetFileName() << std::endl
- << "Reason: opj_create_decompress(CODEC_J2K) returns nullptr");
+ << "Reason: opj_create_decompress(OPJ_CODEC_J2K) returns nullptr");
}
break;
}
@@ -202,14 +194,14 @@ JPEG2000ImageIO::ReadImageInformation()
{
/* JPEG 2000 compressed image data */
/* get a decoder handle */
- this->m_Internal->m_Dinfo = opj_create_decompress(CODEC_JP2);
+ this->m_Internal->m_Dinfo = opj_create_decompress(OPJ_CODEC_JP2);
if (!this->m_Internal->m_Dinfo)
{
opj_stream_destroy(cio);
- fclose(l_file);
+ // fclose(l_file);
itkExceptionMacro("JPEG2000ImageIO failed to read file: "
<< this->GetFileName() << std::endl
- << "Reason: opj_create_decompress(CODEC_JP2) returns nullptr");
+ << "Reason: opj_create_decompress(OPJ_CODEC_JP2) returns nullptr");
}
break;
}
@@ -217,20 +209,19 @@ JPEG2000ImageIO::ReadImageInformation()
{
/* JPEG 2000, JPIP */
/* get a decoder handle */
- this->m_Internal->m_Dinfo = opj_create_decompress(CODEC_JPT);
+ this->m_Internal->m_Dinfo = opj_create_decompress(OPJ_CODEC_JPT);
if (!this->m_Internal->m_Dinfo)
{
opj_stream_destroy(cio);
- fclose(l_file);
+ // fclose(l_file);
itkExceptionMacro("JPEG2000ImageIO failed to read file: "
<< this->GetFileName() << std::endl
- << "Reason: opj_create_decompress(CODEC_JPT) returns nullptr");
+ << "Reason: opj_create_decompress(OPJ_CODEC_JPT) returns nullptr");
}
break;
}
default:
opj_stream_destroy(cio);
- fclose(l_file);
itkExceptionMacro("JPEG2000ImageIO failed to read file: "
<< this->GetFileName() << std::endl
<< "Reason: "
@@ -247,27 +238,11 @@ JPEG2000ImageIO::ReadImageInformation()
<< "Reason: opj_setup_decoder returns false");
}
- // Image parameters - first tile
- OPJ_INT32 l_tile_x0;
- OPJ_INT32 l_tile_y0;
- // Image parameters - tile width, height and number of tiles
- OPJ_UINT32 l_tile_width;
- OPJ_UINT32 l_tile_height;
- OPJ_UINT32 l_nb_tiles_x;
- OPJ_UINT32 l_nb_tiles_y;
itkDebugMacro(<< "Trying to read header now...");
- bResult = opj_read_header(this->m_Internal->m_Dinfo,
- &l_image,
- &l_tile_x0,
- &l_tile_y0,
- &l_tile_width,
- &l_tile_height,
- &l_nb_tiles_x,
- &l_nb_tiles_y,
- cio);
+ bResult = opj_read_header(cio, this->m_Internal->m_Dinfo, &l_image);
if (!bResult)
{
@@ -283,14 +258,22 @@ JPEG2000ImageIO::ReadImageInformation()
<< "Reason: Error whle reading image header");
}
+ // Image parameters - first tile
+ OPJ_INT32 l_tile_x0=l_image->x0;
+ OPJ_INT32 l_tile_y0=l_image->y0;
+
+ // Image parameters - tile width, height and number of tiles
+ OPJ_UINT32 l_tile_width=l_image->x1;
+ OPJ_UINT32 l_tile_height=l_image->y1;
+ OPJ_UINT32 l_nb_tiles=l_image->numcomps;
+
this->m_Internal->m_TileStartX = l_tile_x0;
this->m_Internal->m_TileStartY = l_tile_y0;
this->m_Internal->m_TileWidth = l_tile_width;
this->m_Internal->m_TileHeight = l_tile_height;
- this->m_Internal->m_NumberOfTilesInX = l_nb_tiles_x;
- this->m_Internal->m_NumberOfTilesInY = l_nb_tiles_y;
+ this->m_Internal->m_NumberOfTiles = l_nb_tiles;
itkDebugMacro(<< "Number of Components = " << l_image->numcomps);
@@ -319,7 +302,7 @@ JPEG2000ImageIO::ReadImageInformation()
this->SetPixelType(IOPixelEnum::SCALAR);
break;
case 3:
- if (l_image->color_space != CLRSPC_SRGB)
+ if (l_image->color_space != OPJ_CLRSPC_SRGB)
{
itkWarningMacro(<< "file does not specify color space, assuming sRGB");
}
@@ -335,8 +318,7 @@ JPEG2000ImageIO::ReadImageInformation()
itkDebugMacro(<< "Tile Start Y = " << this->m_Internal->m_TileStartY);
itkDebugMacro(<< "Tile Width = " << this->m_Internal->m_TileWidth);
itkDebugMacro(<< "Tile Height = " << this->m_Internal->m_TileHeight);
- itkDebugMacro(<< "Number of Tiles X = " << this->m_Internal->m_NumberOfTilesInX);
- itkDebugMacro(<< "Number of Tiles Y = " << this->m_Internal->m_NumberOfTilesInY);
+ itkDebugMacro(<< "Number of Tiles = " << this->m_Internal->m_NumberOfTiles);
itkDebugMacro(<< "image->x1 = " << l_image->x1);
itkDebugMacro(<< "image->y1 = " << l_image->y1);
@@ -349,7 +331,6 @@ JPEG2000ImageIO::ReadImageInformation()
/* close the byte stream */
opj_stream_destroy(cio);
- fclose(l_file);
if (this->m_Internal->m_Dinfo)
{
@@ -368,16 +349,7 @@ JPEG2000ImageIO::Read(void * buffer)
{
itkDebugMacro(<< "JPEG2000ImageIO::Read() Begin");
- FILE * l_file = fopen(this->m_FileName.c_str(), "rb");
-
- if (!l_file)
- {
- itkExceptionMacro("JPEG2000ImageIO failed to open file for reading: " << this->GetFileName() << std::endl
- << "Reason: "
- << itksys::SystemTools::GetLastSystemError());
- }
-
- opj_stream_t * l_stream = opj_stream_create_default_file_stream(l_file, true);
+ opj_stream_t * l_stream = opj_stream_create_default_file_stream(this->m_FileName.c_str(), true);
if (!l_stream)
{
itkExceptionMacro("JPEG2000ImageIO failed to read file: "
@@ -397,12 +369,13 @@ JPEG2000ImageIO::Read(void * buffer)
{
/* JPEG-2000 codestream */
/* get a decoder handle */
- this->m_Internal->m_Dinfo = opj_create_decompress(CODEC_J2K);
+ this->m_Internal->m_Dinfo = opj_create_decompress(OPJ_CODEC_J2K);
if (!this->m_Internal->m_Dinfo)
{
+ opj_stream_destroy(l_stream);
itkExceptionMacro("JPEG2000ImageIO failed to read file: "
<< this->GetFileName() << std::endl
- << "Reason: opj_create_decompress(CODEC_J2K) returns nullptr");
+ << "Reason: opj_create_decompress(OPJ_CODEC_J2K) returns nullptr");
}
break;
}
@@ -410,12 +383,13 @@ JPEG2000ImageIO::Read(void * buffer)
{
/* JPEG 2000 compressed image data */
/* get a decoder handle */
- this->m_Internal->m_Dinfo = opj_create_decompress(CODEC_JP2);
+ this->m_Internal->m_Dinfo = opj_create_decompress(OPJ_CODEC_JP2);
if (!this->m_Internal->m_Dinfo)
{
+ opj_stream_destroy(l_stream);
itkExceptionMacro("JPEG2000ImageIO failed to read file: "
<< this->GetFileName() << std::endl
- << "Reason: opj_create_decompress(CODEC_JP2) returns nullptr");
+ << "Reason: opj_create_decompress(OPJ_CODEC_JP2) returns nullptr");
}
break;
}
@@ -423,17 +397,18 @@ JPEG2000ImageIO::Read(void * buffer)
{
/* JPEG 2000, JPIP */
/* get a decoder handle */
- this->m_Internal->m_Dinfo = opj_create_decompress(CODEC_JPT);
+ this->m_Internal->m_Dinfo = opj_create_decompress(OPJ_CODEC_JPT);
if (!this->m_Internal->m_Dinfo)
{
+ opj_stream_destroy(l_stream);
itkExceptionMacro("JPEG2000ImageIO failed to read file: "
<< this->GetFileName() << std::endl
- << "Reason: opj_create_decompress(CODEC_JPT) returns nullptr");
+ << "Reason: opj_create_decompress(OPJ_CODEC_JPT) returns nullptr");
}
break;
}
default:
- fclose(l_file);
+ opj_stream_destroy(l_stream);
itkExceptionMacro("JPEG2000ImageIO failed to read file: "
<< this->GetFileName() << std::endl
<< "Reason: "
@@ -448,29 +423,13 @@ JPEG2000ImageIO::Read(void * buffer)
<< "Reason: opj_setup_decoder returns false");
}
- OPJ_INT32 l_tile_x0, l_tile_y0;
-
- OPJ_UINT32 l_tile_width;
- OPJ_UINT32 l_tile_height;
- OPJ_UINT32 l_nb_tiles_x;
- OPJ_UINT32 l_nb_tiles_y;
-
- bool bResult = opj_read_header(this->m_Internal->m_Dinfo,
- &l_image,
- &l_tile_x0,
- &l_tile_y0,
- &l_tile_width,
- &l_tile_height,
- &l_nb_tiles_x,
- &l_nb_tiles_y,
- l_stream);
+ bool bResult = opj_read_header(l_stream, this->m_Internal->m_Dinfo,&l_image);
if (!bResult)
{
opj_destroy_codec(this->m_Internal->m_Dinfo);
this->m_Internal->m_Dinfo = nullptr;
opj_stream_destroy(l_stream);
- fclose(l_file);
itkExceptionMacro("JPEG2000ImageIO failed to read file: " << this->GetFileName() << std::endl
<< "Reason: opj_read_header returns false");
}
@@ -499,7 +458,7 @@ JPEG2000ImageIO::Read(void * buffer)
itkDebugMacro(<< "p_end_x = " << p_end_x);
itkDebugMacro(<< "p_end_y = " << p_end_y);
- bResult = opj_set_decode_area(this->m_Internal->m_Dinfo, p_start_x, p_start_y, p_end_x, p_end_y);
+ bResult = opj_set_decode_area(this->m_Internal->m_Dinfo, l_image, p_start_x, p_start_y, p_end_x, p_end_y);
itkDebugMacro(<< "opj_set_decode_area() after");
@@ -508,7 +467,6 @@ JPEG2000ImageIO::Read(void * buffer)
opj_destroy_codec(this->m_Internal->m_Dinfo);
this->m_Internal->m_Dinfo = nullptr;
opj_stream_destroy(l_stream);
- fclose(l_file);
itkExceptionMacro("JPEG2000ImageIO failed to read file: " << this->GetFileName() << std::endl
<< "Reason: opj_set_decode_area returns false");
}
@@ -525,13 +483,13 @@ JPEG2000ImageIO::Read(void * buffer)
OPJ_UINT32 l_max_data_size = 1000;
- bool l_go_on = true;
+ int l_go_on = true; // should be OBJ_BOOL
auto * l_data = (OPJ_BYTE *)malloc(1000);
while (l_go_on)
{
- bool tileHeaderRead = opj_read_tile_header(this->m_Internal->m_Dinfo,
+ bool tileHeaderRead = opj_read_tile_header(this->m_Internal->m_Dinfo, l_stream,
&l_tile_index,
&l_data_size,
&l_current_tile_x0,
@@ -539,14 +497,12 @@ JPEG2000ImageIO::Read(void * buffer)
&l_current_tile_x1,
&l_current_tile_y1,
&l_nb_comps,
- &l_go_on,
- l_stream);
+ &l_go_on);
if (!tileHeaderRead)
{
free(l_data);
opj_stream_destroy(l_stream);
- fclose(l_file);
opj_destroy_codec(this->m_Internal->m_Dinfo);
opj_image_destroy(l_image);
itkExceptionMacro("JPEG2000ImageIO failed to read file: " << this->GetFileName() << std::endl
@@ -571,7 +527,6 @@ JPEG2000ImageIO::Read(void * buffer)
if (!l_data)
{
opj_stream_destroy(l_stream);
- fclose(l_file);
opj_destroy_codec(this->m_Internal->m_Dinfo);
opj_image_destroy(l_image);
itkExceptionMacro("JPEG2000ImageIO failed to read file: " << this->GetFileName() << std::endl
@@ -590,7 +545,6 @@ JPEG2000ImageIO::Read(void * buffer)
{
free(l_data);
opj_stream_destroy(l_stream);
- fclose(l_file);
opj_destroy_codec(this->m_Internal->m_Dinfo);
opj_image_destroy(l_image);
itkExceptionMacro("JPEG2000ImageIO failed to read file: " << this->GetFileName() << std::endl
@@ -654,7 +608,6 @@ JPEG2000ImageIO::Read(void * buffer)
{
free(l_data);
opj_stream_destroy(l_stream);
- fclose(l_file);
opj_destroy_codec(this->m_Internal->m_Dinfo);
opj_image_destroy(l_image);
itkExceptionMacro("JPEG2000ImageIO failed to read file: " << this->GetFileName() << std::endl
@@ -666,14 +619,12 @@ JPEG2000ImageIO::Read(void * buffer)
opj_destroy_codec(this->m_Internal->m_Dinfo);
this->m_Internal->m_Dinfo = nullptr;
opj_stream_destroy(l_stream);
- fclose(l_file);
itkExceptionMacro("JPEG2000ImageIO failed to read file: " << this->GetFileName() << std::endl
<< "Reason: error whle reading image");
}
/* close the byte stream */
opj_stream_destroy(l_stream);
- fclose(l_file);
if (this->m_Internal->m_Dinfo)
{
@@ -840,13 +791,13 @@ JPEG2000ImageIO ::Write(const void * buffer)
parameters.numresolution = numberOfResolutions;
- OPJ_COLOR_SPACE color_space = CLRSPC_GRAY;
+ OPJ_COLOR_SPACE color_space = OPJ_CLRSPC_GRAY;
opj_image_cmptparm_t cmptparms[3];
if (this->GetNumberOfComponents() == 3)
{
- color_space = (this->GetPixelType() == IOPixelEnum::RGB) ? CLRSPC_SRGB : CLRSPC_UNSPECIFIED;
+ color_space = (this->GetPixelType() == IOPixelEnum::RGB) ? OPJ_CLRSPC_SRGB : OPJ_CLRSPC_UNSPECIFIED;
/* initialize image components */
memset(&cmptparms[0], 0, 3 * sizeof(opj_image_cmptparm_t));
@@ -864,7 +815,7 @@ JPEG2000ImageIO ::Write(const void * buffer)
if (this->GetNumberOfComponents() == 1)
{
- color_space = CLRSPC_GRAY;
+ color_space = OPJ_CLRSPC_GRAY;
/* initialize image components */
memset(&cmptparms[0], 0, sizeof(opj_image_cmptparm_t));
@@ -940,32 +891,32 @@ JPEG2000ImageIO ::Write(const void * buffer)
opj_codec_t * cinfo = nullptr;
if (extension == ".j2k")
{
- cinfo = opj_create_compress(CODEC_J2K);
+ cinfo = opj_create_compress(OPJ_CODEC_J2K);
if (!cinfo)
{
itkExceptionMacro("JPEG2000ImageIO failed to write file: "
<< this->GetFileName() << std::endl
- << "Reason: opj_create_compress(CODEC_J2K) returns nullptr");
+ << "Reason: opj_create_compress(OPJ_CODEC_J2K) returns nullptr");
}
}
else if (extension == ".jp2")
{
- cinfo = opj_create_compress(CODEC_JP2);
+ cinfo = opj_create_compress(OPJ_CODEC_JP2);
if (!cinfo)
{
itkExceptionMacro("JPEG2000ImageIO failed to write file: "
<< this->GetFileName() << std::endl
- << "Reason: opj_create_compress(CODEC_JP2) returns nullptr");
+ << "Reason: opj_create_compress(OPJ_CODEC_JP2) returns nullptr");
}
}
else if (extension == ".jpt")
{
- cinfo = opj_create_compress(CODEC_JPT);
+ cinfo = opj_create_compress(OPJ_CODEC_JPT);
if (!cinfo)
{
itkExceptionMacro("JPEG2000ImageIO failed to write file: "
<< this->GetFileName() << std::endl
- << "Reason: opj_create_compress(CODEC_JPT) returns nullptr");
+ << "Reason: opj_create_compress(OPJ_CODEC_JPT) returns nullptr");
}
}
else
@@ -989,17 +940,9 @@ JPEG2000ImageIO ::Write(const void * buffer)
<< "Reason: opj_setup_encoder returns false");
}
- FILE * l_file = fopen(parameters.outfile, "wb");
- if (!l_file)
- {
- itkExceptionMacro("JPEG2000ImageIO failed to open file for writing: " << this->GetFileName() << std::endl
- << "Reason: "
- << itksys::SystemTools::GetLastSystemError());
- }
-
/* open a byte stream for writing */
/* allocate memory for all tiles */
- opj_stream_t * cio = opj_stream_create_default_file_stream(l_file, false);
+ opj_stream_t * cio = opj_stream_create_default_file_stream(parameters.outfile, false);
if (!cio)
{
itkExceptionMacro("JPEG2000ImageIO failed to write file: "
@@ -1017,8 +960,7 @@ JPEG2000ImageIO ::Write(const void * buffer)
if (!bSuccess)
{
opj_stream_destroy(cio);
- fclose(l_file);
- itkExceptionMacro("JPEG2000ImageIO failed to write file: " << this->GetFileName() << std::endl
+ itkExceptionMacro("JPEG2000ImageIO failed to write file: " << this->GetFileName() << std::endl
<< "Reason: opj_start_compress returns false");
}
@@ -1026,7 +968,6 @@ JPEG2000ImageIO ::Write(const void * buffer)
if (!bSuccess)
{
opj_stream_destroy(cio);
- fclose(l_file);
itkExceptionMacro("JPEG2000ImageIO failed to write file: " << this->GetFileName() << std::endl
<< "Reason: opj_encode returns false");
}
@@ -1035,14 +976,12 @@ JPEG2000ImageIO ::Write(const void * buffer)
if (!bSuccess)
{
opj_stream_destroy(cio);
- fclose(l_file);
itkExceptionMacro("JPEG2000ImageIO failed to write file: " << this->GetFileName() << std::endl
<< "Reason: opj_end_compress returns false");
}
/* close and free the byte stream */
opj_stream_destroy(cio);
- fclose(l_file);
/* free remaining compression structures */
opj_destroy_codec(cinfo);
diff --git a/Modules/ThirdParty/OpenJPEG/CMakeLists.txt b/Modules/ThirdParty/OpenJPEG/CMakeLists.txt
index 103eaa9dd..eb8989135 100644
--- a/Modules/ThirdParty/OpenJPEG/CMakeLists.txt
+++ b/Modules/ThirdParty/OpenJPEG/CMakeLists.txt
@@ -1,12 +1,25 @@
project(ITKOpenJPEG)
set(ITKOpenJPEG_THIRD_PARTY 1)
-set(ITKOpenJPEG_INCLUDE_DIRS
- ${ITKOpenJPEG_BINARY_DIR}/src/openjpeg
- ${ITKOpenJPEG_SOURCE_DIR}/src/openjpeg
- )
-set(ITKOpenJPEG_LIBRARIES itkopenjpeg)
-set(ITK_LIBRARY_PROPERTIES WINDOWS_EXPORT_ALL_SYMBOLS FALSE)
+if(ITK_USE_SYSTEM_OpenJPEG)
+ find_package(OpenJPEG REQUIRED)
+ if(TARGET openjp2)
+ set(ITKOpenJPEG_LIBRARIES ${OPENJPEG_LIBRARIES})
+ else()
+ message(FATAL_ERROR "OpenJPEG target openjp2 missing!")
+ endif()
+ set(ITKOpenJPEG_INCLUDE_DIRS
+ ${ITKOpenJPEG_BINARY_DIR}/src/openjpeg
+ ${ITKOpenJPEG_SOURCE_DIR}/src/openjpeg
+ )
+else()
+ set(ITKOpenJPEG_INCLUDE_DIRS
+ ${ITKOpenJPEG_BINARY_DIR}/src/openjpeg
+ ${ITKOpenJPEG_SOURCE_DIR}/src/openjpeg
+ )
+ set(ITKOpenJPEG_LIBRARIES itkopenjpeg)
+ set(ITK_LIBRARY_PROPERTIES WINDOWS_EXPORT_ALL_SYMBOLS FALSE)
+endif()
itk_module_impl()